MethylAid - Visual and interactive quality control of large Illumina DNA Methylation array data sets
A visual and interactive web application using RStudio's shiny package. Bad quality samples are detected using sample-dependent and sample-independent controls present on the array and user adjustable thresholds. In depth exploration of bad quality samples can be performed using several interactive diagnostic plots of the quality control probes present on the array. Furthermore, the impact of any batch effect provided by the user can be explored.
Last updated 4 months ago
dnamethylationmethylationarraymicroarraytwochannelqualitycontrolbatcheffectvisualizationgui
3.74 score 160 dependenciesOmixer - Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies
Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.
Last updated 4 months ago
datarepresentationexperimentaldesignqualitycontrolsoftwarevisualization
0.49 score 46 dependencies